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版本:0.6.12

Starwhale的 Helloworld 例子-评测KNN算法在手写体数字识别任务上的效果

本篇教程会从 Starwhale Client 的安装开始,介绍编写评测代码,制作数据集, 在 Standalone 实例上进行调试,并最终在 Server 实例上运行评测的全过程。

基本信息

安装 Starwhale Client

python3 -m pip install starwhale

构建 Starwhale 运行时

Starwhale 运行时提供一系列的 Python 环境定义和重现工具,能够满足机器学习开发、调试对环境方面的需求。制作 Starwhale 运行时典型方式是从编写 runtime.yaml 开始:

name: helloworld  # runtime name
mode: venv # use virtualenv
dependencies: # python deps
- requirements.txt

Helloworld 例子中,我们先定义运行时的名称,并设置Python 隔离环境为venv,最后再增加一些 Python 依赖,就完成了 runtime.yaml 的定义。虽然定义很简单,但 Starwhale 会帮助您在后台做很多关于环境的事情,比如:

  • 屏蔽 Docker Image 和 Dockerfile 等细节
  • 自动增加 CUDA 和 CuDNN 依赖
  • 提供一个满足机器学习开发所需要的,精心优化的Docker Base Image
  • 自动锁定所有依赖的版本,确保每次复现环境都是一致的
  • 自动锁定 Starwhale Client 版本
  • 自动锁定 Python 版本
  • 提供 venv 和 conda 两种运行隔离环境供选择
  • 提供运行环境的版本控制,并能自由的分享到其他 Starwhale 实例上

接下来,我们一般会执行构建命令,生成一个带有版本号的 Starwhale 运行时:

swcli runtime build --yaml runtime.yaml

执行输出如下:

❯ swcli runtime build --yaml runtime.yaml
🚧 start to build runtime bundle...
👷 uri local/project/self/runtime/helloworld/version/hlp6mixccpi5sdmuoxdstfn5nf5xebu2lac2gz4x
🐦 runtime will ignore pypi editable package
👽 try to lock environment dependencies to /home/tianwei/code/starwhale/example/helloworld ...
🦋 lock dependencies at mode venv
🍼 install runtime.yaml dependencies @ /home/tianwei/code/starwhale/example/helloworld/.starwhale/venv for lock...
🐱 use /home/tianwei/code/starwhale/example/helloworld/.starwhale/venv/bin/python3 to freeze requirements...
🐭 dump lock file: /home/tianwei/code/starwhale/example/helloworld/.starwhale/lock/requirements-sw-lock.txt
📁 workdir: /home/tianwei/.starwhale/self/workdir/runtime/helloworld/hl/hlp6mixccpi5sdmuoxdstfn5nf5xebu2lac2gz4x
🐝 dump environment info...
🥯 dump dependencies info...
🌈 runtime uses builtin docker image: docker-registry.starwhale.cn/star-whale/base:0.3.4 🌈
🦋 .swrt bundle:/home/tianwei/.starwhale/self/runtime/helloworld/hl/hlp6mixccpi5sdmuoxdstfn5nf5xebu2lac2gz4x.swrt
10 out of 10 steps finished ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 100% 0:00:00 0:00:00

然后可以通过 runtime 一些管理命令来查看版本等信息:

swcli runtime list
swcli runtime info helloworld

runtime-build

我们可以使用构建好的 Starwhale 运行时作为运行环境来执行模型包的构建、数据集构建和模型评测任务等。

构建 MNIST 数据集

MNIST是一个在图像处理任务中被广泛使用的数据集,由一些手写体数字图片组成。本例子中,我们使用 sklearn 库中的 MNIST64 数据集,是一个简化版本的MNIST,包含500张 8*8 像素的图片。

Starwhale 提供一系列针对数据集构建和加载的Python SDK,可以通过少量代码就能构建非结构化的数据集。下面我们看一下 MNIST 数据集构建的核心代码,完整代码参见dataset.py

import io
from pathlib import Path

import numpy as np
from PIL import Image as PILImage
from tqdm import tqdm

from starwhale import Image, dataset, MIMEType, init_logger

init_logger(3)

# download the raw data
data_dir = Path(__file__).parent / "data"
url = "https://starwhale-examples.oss-cn-beijing.aliyuncs.com/dataset/mnist/digits.csv"
download(url, data_dir / fname)

# build Starwhale Dataset
with dataset("mnist64") as ds: # <---- define starwhale dataset object
with (data_dir / fname).open("r") as f:
data = np.loadtxt(f, delimiter=",")
targets = data[:, -1].astype(int, copy=False)
images = data[:, :-1]

for i in tqdm(range(0, min(500, len(images)))):
img_2d_array = (np.reshape(images[i], (8, 8)) * 255).astype(np.uint8)
img_bytes = io.BytesIO()
PILImage.fromarray(img_2d_array, "L").save(img_bytes, format="PNG")
ds[i] = { # <----- append data into dataset
"img": Image(
img_bytes.getvalue(),
display_name=f"{i}",
shape=(8, 8, 1),
mime_type=MIMEType.PNG,
),
"label": targets[i],
}
ds.commit() # <---- commit dataset

print(f"{ds.uri} dataset build done")

构建 Starwhale Dataset 三个步骤:

  • 声明 Starwhale Dataset 对象:with dataset("mnist64") as ds:
  • 迭代原始数据,添加到 Starwhale Dataset 对象中,类似dict或list添加元素方式:ds[i]={"img": Image(), ...}
  • 提交变更,产生数据集版本:ds.commit()

当执行完数据集构建脚本后,可以通过swcli命令来查看数据集详细信息:

swcli -vvv runtime activate helloworld
python3 dataset.py
dataset-build

另外,Starwhale Dataset 支持完整的Python SDK操作,可以在类似jupyternotebook或ipython等交互环境中进行数据集功能的体验,可以参考dataset sdk例子

编写模型评测程序

Starwhale 提供一系列针对模型评测的Python SDK,只需要修改少量代码,就能实现分布式的、多数据集的模型评测。Starwhale 一般建议模型评测分为 predictevaluate 两个阶段。每个阶段都可以指定资源使用量,并可以通过 needs 参数设置任务依赖。完整代码参见evaluation.py

predict 阶段

from starwhale import Image, evaluation

@evaluation.predict(
resources={"memory": {"request": "500M", "limit": "2G"}},
replicas=3,
log_mode="plain",
)
def predict_image(data):
img: Image = data["img"]
model = _load_model()
input_name = model.get_inputs()[0].name
label_name = model.get_outputs()[0].name
input_array = [img.to_numpy().astype(np.float32).reshape(64)]
pred = model.run([label_name], {input_name: input_array})[0]
return pred.item()

predict 阶段相当于MapReduce架构中的map,是把数据集条目分类到每个 predict 任务上,每个predict任务会分别加载模型,根据数据集输入数据,并完成推理。返回的推理结果会被 Starwhale 自动记录到相关datastore表中,可以在 evaluate 阶段中使用。

evaluate 阶段

from starwhale import Image, evaluation, multi_classification
@evaluation.evaluate(
needs=[predict_image],
resources={"memory": {"request": "500M", "limit": "2G"}},
)
@multi_classification(
confusion_matrix_normalize="all",
show_hamming_loss=True,
show_cohen_kappa_score=True,
show_roc_auc=False,
all_labels=[i for i in range(0, 10)],
)
def evaluate_results(predict_result_iter):
result, label = [], []
for _data in predict_result_iter:
label.append(_data["input"]["label"])
result.append(_data["output"])
return label, result

evaluate 阶段相当于MapReduce架构中的reduce,是把上一阶段 predict 产生的推理结果进行汇总,然后计算一些模型评价指标,最后写入到一些datastore表中,方便做进一步的对比、分析。Helloworld例子是经典的多分类问题,我们可以直接使用 @starwhale.multi_classification 修饰器进行指标的分析,产生 Recall/Accuracy/Precision 等指标。

构建 Starwhale 模型

Starwhale 模型构建过程非常简单,通过 swcli 或 Python SDK 调用模型构建,将相关文件打包生成一个带有版本、可分享、可运行的Starwhale 模型包。

swcli -vvv model build . --name helloworld -m evaluation --runtime helloworld

上面命令会进行如下操作:

  • . 目录下的文件及子目录文件进行打包,主要是权重文件、Python代码和配置文件等。打包时,会根据 .swignore 文件决定哪些文件或目录会被忽略。
  • Starwhale 模型包自动识别根目录下的 README.md 文件,会在 Starwhale Server Web中渲染出来。
  • 分析 evaluation 模块中的函数定义,生成 Starwhale 模型运行的handler。
  • 使用 helloworld 运行时来运行打包过程,由于 Starwhale 模型制作过程中加载代码文件,所以构建模型时使用Starwhale 运行时是推荐的做法。
  • 将 helloworld 运行时自动注入到 Starwhale 模型中,变成内建运行时,与模型包共同分发。
  • 生成一个带有唯一版本的模型包,可以进行不同实例上的分发。
❯ swcli model build . --name helloworld -m evaluation --runtime helloworld
🦉 start to run in the new process with runtime environment: local/project/self/runtime/helloworld/version/tck2tqgpddomop4byfjbwmqk6aacg4wamidtm7eu
🐌 start to restore runtime: local/project/self/runtime/helloworld/version/tck2tqgpddomop4byfjbwmqk6aacg4wamidtm7eu
🧮 setup python(3.9) env with venv...
👏 create venv@/home/tianwei/.starwhale/self/workdir/runtime/helloworld/tc/tck2tqgpddomop4byfjbwmqk6aacg4wamidtm7eu/export/venv, python:3.9.13 (main, Oct 13 2022, 21:15:33)
🍡 installing dependencies for pip_req_file:.starwhale/lock/requirements-sw-lock.txt in the venv environment
6 out of 6 steps finished ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 100% 0:00:00 0:00:30
🐓 run process in the python isolated environment(prefix: /home/tianwei/.starwhale/self/workdir/runtime/helloworld/tc/tck2tqgpddomop4byfjbwmqk6aacg4wamidtm7eu/export/venv)
🚧 start to build model bundle...
👷 uri local/project/self/model/helloworld/version/somjliyhbtqhcldnvnlapwpqsrignyem6ik564vb
📁 workdir: /home/tianwei/.starwhale/.tmp/tmpcihsv20w
🦚 copy source code files: . -> /home/tianwei/.starwhale/.tmp/tmpcihsv20w/src
📁 source code files size: 238.35KiB
💿 package runtime(local/project/self/runtime/helloworld/version/tck2tqgpddomop4byfjbwmqk6aacg4wamidtm7eu) to /home/tianwei/.starwhale/.tmp/tmpcihsv20w/src/.starwhale/runtime/packaged.swrt
🚀 generate jobs yaml from modules: ('evaluation',) , package rootdir: .
10 out of 10 steps finished ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 100% 0:00:00 0:00:00
💯 finish gen resource @ /home/tianwei/.starwhale/self/model/helloworld/so/somjliyhbtqhcldnvnlapwpqsrignyem6ik564vb.swmp

model-info

Standalone 实例上进行模型评测

上面我们已经完成模型包、运行时和数据集的构建,接下来就可以进行模型评测,检测一些模型评测效果了。Starwhale Standalone 实例是专门为开发调试环境设计的,模型评测也可以现在 Standalone 上用少量数据进行,等代码运行没有问题后,再到 Starwhale Server 或 Starwhale Cloud 实例上运行更大规模的评测数据集。

swcli -vvv model run --uri helloworld --dataset mnist64 --runtime helloworld --dataset-head 10

我们只使用数据集前10条数据进行评测,命令输出如下:

❯ swcli -vvv model run --uri helloworld --dataset mnist64 --runtime helloworld --dataset-head 10
[2023-12-07 16:30:28.334074] 👾 verbosity: 3, log level: DEBUG
[2023-12-07 16:30:28.346034] 🦉 start to run in the new process with runtime environment: local/project/self/runtime/helloworld/version/tck2tqgpddomop4byfjbwmqk6aacg4wamidtm7eu
[2023-12-07 16:30:28.346984] 🐓 run process in the python isolated environment(prefix: /home/tianwei/.starwhale/self/workdir/runtime/helloworld/tc/tck2tqgpddomop4byfjbwmqk6aacg4wamidtm7eu/export/venv)
[2023-12-07 16:30:28.363485] 🔈 |DEBUG| cmd: ['bash', '-c', 'source /home/tianwei/.starwhale/self/workdir/runtime/helloworld/tc/tck2tqgpddomop4byfjbwmqk6aacg4wamidtm7eu/export/venv/bin/activate && /home/tianwei/.starwhale/self/workdir/runtime/helloworld/tc/tck2tqgpddomop4byfjbwmqk6aacg4wamidtm7eu/export/venv/bin/swcli -vvv model run --uri helloworld --dataset mnist64 --dataset-head 10']
[2023-12-07 16:30:29.996979] 👾 verbosity: 3, log level: DEBUG
[2023-12-07 16:30:30.005397] ✈ change current dir to /home/tianwei/.starwhale/self/job/cj/cjas3yao3l5nvfw5hkkx5x7al2d6cgtsabqjirpu/snapshot
[2023-12-07 16:30:30.005850] ⏳ start to run model, handler:0 ...
[2023-12-07 16:30:30.010668] 🏦 runnable handlers:
[2023-12-07 16:30:30.011033] * [0]: evaluation:evaluate_results
[2023-12-07 16:30:30.011466] [1]: evaluation:predict_image
[2023-12-07 16:30:30.012296] 💡 |INFO| start to execute step: Step: handler-evaluation:.predict_image
[2023-12-07 16:30:30.014036] 💡 |INFO| start to execute task: context(step:evaluation:predict_image, index:0/1) step(Step: handler-evaluation:.predict_image, {'name': 'evaluation:predict_image', 'show_name': 'predict', 'module_name': 'evaluation', 'cls_name': '', 'func_name': 'predict_image', 'resources': [RuntimeResource(type='memory', request=500000000.0, limit=2000000000.0)], 'task_num': 1, 'needs': [], 'extra_args': [], 'extra_kwargs': {'dataset_uris': None, 'ignore_error': False, 'predict_auto_log': True, 'predict_batch_size': 1, 'predict_log_dataset_features': None, 'predict_log_mode': 'plain'}, 'expose': 0, 'virtual': None, 'require_dataset': True})
[2023-12-07 16:30:30.036313] 💡 |INFO| start to run _starwhale_internal_run_predict function@evaluation:predict_image-0 ...
[2023-12-07 16:30:30.216042] 💡 |INFO| thread-140277817129088 handle scan-range: (0, 50)
[2023-12-07 16:30:30.237276] 🔈 |DEBUG| new store backendObjectStore backend:StorageBackend for local_fs created for key: local.
[2023-12-07 16:30:30.254205] 💡 |INFO| thread-140277817129088 handle scan-range: (50, 100)
[2023-12-07 16:30:30.297356] 🔈 |DEBUG| use 0.058s, session-id:cjas3yao3l5nvfw5hkkx5x7al2d6cgtsabqjirpu @evaluation:predict_image-0
[2023-12-07 16:30:30.301059] 💡 |INFO| thread-140277817129088 handle scan-range: (100, 150)
[2023-12-07 16:30:30.301784] 🔈 |DEBUG| use 0.004s, session-id:cjas3yao3l5nvfw5hkkx5x7al2d6cgtsabqjirpu @evaluation:predict_image-0
[2023-12-07 16:30:30.304711] 🔈 |DEBUG| use 0.002s, session-id:cjas3yao3l5nvfw5hkkx5x7al2d6cgtsabqjirpu @evaluation:predict_image-0
[2023-12-07 16:30:30.307783] 🔈 |DEBUG| use 0.002s, session-id:cjas3yao3l5nvfw5hkkx5x7al2d6cgtsabqjirpu @evaluation:predict_image-0
[2023-12-07 16:30:30.311066] 🔈 |DEBUG| use 0.003s, session-id:cjas3yao3l5nvfw5hkkx5x7al2d6cgtsabqjirpu @evaluation:predict_image-0
[2023-12-07 16:30:30.314291] 🔈 |DEBUG| use 0.002s, session-id:cjas3yao3l5nvfw5hkkx5x7al2d6cgtsabqjirpu @evaluation:predict_image-0
[2023-12-07 16:30:30.318806] 🔈 |DEBUG| use 0.004s, session-id:cjas3yao3l5nvfw5hkkx5x7al2d6cgtsabqjirpu @evaluation:predict_image-0
[2023-12-07 16:30:30.323726] 🔈 |DEBUG| use 0.004s, session-id:cjas3yao3l5nvfw5hkkx5x7al2d6cgtsabqjirpu @evaluation:predict_image-0
[2023-12-07 16:30:30.357769] 🔈 |DEBUG| use 0.033s, session-id:cjas3yao3l5nvfw5hkkx5x7al2d6cgtsabqjirpu @evaluation:predict_image-0
[2023-12-07 16:30:30.361139] 🔈 |DEBUG| use 0.003s, session-id:cjas3yao3l5nvfw5hkkx5x7al2d6cgtsabqjirpu @evaluation:predict_image-0
[2023-12-07 16:30:30.463597] 💡 |INFO| evaluation:predict_image-0 received 10 data items for dataset ('mnist64',)
[2023-12-07 16:30:30.464840] 🔈 |DEBUG| execute evaluation:predict_image-0 exit func...
[2023-12-07 16:30:30.465232] 💡 |INFO| finish step:evaluation:predict_image, index:0/1, status:success, error:None
[2023-12-07 16:30:30.465829] 💡 |INFO| finish to execute step[1]:Step: handler-evaluation:.predict_image
[2023-12-07 16:30:30.466943] 💡 |INFO| start to execute step: Step: handler-evaluation:.evaluate_results
[2023-12-07 16:30:30.467755] 💡 |INFO| start to execute task: context(step:evaluation:evaluate_results, index:0/1) step(Step: handler-evaluation:.evaluate_results, {'name': 'evaluation:evaluate_results', 'show_name': 'evaluate', 'module_name': 'evaluation', 'cls_name': '', 'func_name': 'evaluate_results', 'resources': [RuntimeResource(type='memory', request=500000000.0, limit=2000000000.0)], 'task_num': 1, 'needs': ['evaluation:predict_image'], 'extra_args': [], 'extra_kwargs': {'predict_auto_log': True}, 'expose': 0, 'virtual': None, 'require_dataset': False})
[2023-12-07 16:30:30.472041] 💡 |INFO| start to run _starwhale_internal_run_evaluate function@evaluation:evaluate_results-0 ...
[2023-12-07 16:30:30.485783] 🔈 |DEBUG| execute evaluation:evaluate_results-0 exit func...
[2023-12-07 16:30:30.486566] 💡 |INFO| finish step:evaluation:evaluate_results, index:0/1, status:success, error:None
[2023-12-07 16:30:30.487301] 💡 |INFO| finish to execute step[1]:Step: handler-evaluation:.evaluate_results
[2023-12-07 16:30:30.489883] 💯 finish run, success!

通过 swcli job info 命令来查看模型评测的相关指标:

job-info

启动 Starwhale Server

swcli server start

该命令可以一键在本地启动一个全功能的 Starwhale Server,需要机器提前安装 Docker 和 Docker-Compose。

命令输出如下:

❯ swcli server start
🛸 render compose yaml file: /home/tianwei/.starwhale/.server/docker-compose.yaml
🏓 start Starwhale Server by docker compose
Container starwhale_local-db-1 Running
Container starwhale_local-server-1 Running
Container starwhale_local-db-1 Waiting
Container starwhale_local-db-1 Healthy
Starwhale Server is running in the background.
🍎 stop: swcli server stop
🍌 check status: swcli server status
🍉 more compose command: docker compose -f /home/tianwei/.starwhale/.server/docker-compose.yaml sub-command
🥕 visit web: http://127.0.0.1:8082

拷贝数据集、模型和运行时到 Starwhale Server 上

登录 Starwhale Server

swcli instance login --username starwhale --alias local-server --password abcd1234 http://127.0.0.1:8082

本地启动的 Starwhale Server 服务用户名为 starwhale,密码为 abcd1234

执行拷贝

swcli model cp helloworld cloud://local-server/project/1
swcli runtime cp helloworld cloud://local-server/project/1
swcli dataset cp mnist64 cloud://local-server/project/1

命令输出如下:

❯ swcli model cp helloworld cloud://local-server/project/1
🚧 start to copy local/project/self/model/helloworld/version/somjliyhbtqhcldnvnlapwpqsrignyem6ik564vb -> http://127.0.0.1:8082/project/1/model/helloworld/version/somjliyhbtqhcldnvnlapwpqsrignyem6ik564vb
scanning somjliyhbtqhcldnvnlapwpqsrignyem6ik564vb.swmp...
scan done
uploading metadata...
metadata uploaded
⬆ uploading somjliyhbtqhcldnvnlapwpqsrignyem6ik564vb.swmp... ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 100% 0:00:00 273.8 kB 775.2 kB/s
⬆ uploading the built-in runtime packaged.swrt ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 100% 0:00:00 20.5 kB 5.5 MB/s
🍵 console url of the remote bundle: http://127.0.0.1:8082/projects/1/models/helloworld/versions/somjliyhbtqhcldnvnlapwpqsrignyem6ik564vb/overview
🍵 no tags to copy
👏 copy done.
❯ swcli runtime cp helloworld cloud://local-server/project/1
🚧 start to copy local/project/self/runtime/helloworld/version/tck2tqgpddomop4byfjbwmqk6aacg4wamidtm7eu -> http://127.0.0.1:8082/project/1/runtime/helloworld/version/tck2tqgpddomop4byfjbwmqk6aacg4wamidtm7eu
🎳 upload tck2tqgpddomop4byfjbwmqk6aacg4wamidtm7eu.swrt ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 100% 0:00:00 20.5 kB 16.6 MB/s
🍵 console url of the remote bundle: http://127.0.0.1:8082/projects/1/runtimes/helloworld/versions/tck2tqgpddomop4byfjbwmqk6aacg4wamidtm7eu/overview
🍵 no tags to copy
👏 copy done.
❯ swcli dataset cp mnist64 cloud://local-server/project/1
🚧 start to copy local/project/self/dataset/mnist64/version/rtxx5mdwlzqmomuoe235fx4vokkempa332ivmzcr -> http://127.0.0.1:8082/project/1/dataset/mnist64/version/rtxx5mdwlzqmomuoe235fx4vokkempa332ivmzcr
🐦 copy dataset rows
⠹ ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 500 0:00:01
🦘 update dataset info
🐯 make version for dest instance
🍵 console url of the remote bundle: http://127.0.0.1:8082/projects/1/datasets/mnist64/versions/rtxx5mdwlzqmomuoe235fx4vokkempa332ivmzcr/overview
🍵 no tags to copy
👏 copy done

然后可以通过浏览器访问 http://127.0.0.1:8082,查看上传的模型、数据集和运行时。

server-show

Server 实例上进行模型评测

在评测页面可以选择模型、运行时和数据集,进行评测。

server-submit

评测结果对比

Starwhale 提供功能丰富的评测结果对比和可视化功能,可以在评测页面选择相关的评测结果进行对比分析。

server-summary

恭喜您完成了Starwhale Helloworld例子的所有阶段。